Index B | C | D | E | F | G | L | M | P | Q | R | S | T | V | W B bayesian_differential() (vega.VEGA method) C create_mask() (in module vega.utils) D decode() (vega.VEGA method) differential_activity() (vega.VEGA method) E encode() (vega.VEGA method) F forward() (vega.VEGA method) G GelNet (class in vega.regularizers) generative() (vega.VEGA method) gmv_embedding() (in module vega.plotting) gmv_plot() (in module vega.plotting) L LassoRegularizer (class in vega.regularizers) load() (vega.VEGA class method) loss() (in module vega.plotting) M module vega.plotting vega.regularizers vega.utils P preprocess_anndata() (in module vega.utils) proximal_update() (vega.regularizers.GelNet method) (vega.regularizers.LassoRegularizer method) Q quadratic_update() (vega.regularizers.GelNet method) (vega.regularizers.LassoRegularizer method) R rank_gene_weights() (in module vega.plotting) S sample_latent() (vega.VEGA method) save() (vega.VEGA method) setup_anndata() (in module vega.utils) T to_latent() (vega.VEGA method) train_vega() (vega.VEGA method) V vae_loss() (vega.VEGA method) VEGA (class in vega) vega.plotting module vega.regularizers module vega.utils module VegaSCVI (class in vega) volcano() (in module vega.plotting) W weight_heatmap() (in module vega.plotting)